The Adaptive Evolution Database
Also known as TAED
TAED is a database of phylogenetically indexed gene families. It contains multiple sequence alignments from MAFFT1, maximum likelihood phylogenetic trees from PhyML2, bootstrap values for each node, dN/dS ratios for each lineage from the free ratios model in PAML3, and labels for each node of speciation or duplication from gene tree/species tree reconciliation using SoftParsMap4. The phylogenetic indexing enables simultaneous viewing of lineages with high dN/dS that occurred along the same species tree branches. Resources from the Protein Data Bank (PDB) and the Kyoto Encyclopedia of Genes and Genomes (KEGG)5, have been incorporated into the TAED analysis to detect substitutions along each …
Getting access
Open access Open
- How to apply
- Not yet verified — we don’t publish a route we haven’t checked.
Summarised from a registry — the exact application route is not yet verified.
About this database
| Website | https://liberles.cst.temple.edu/TAED/index.html |
|---|---|
| Subjects | Life Sciences · Biology · Basic Biological and Medical Research |
| Last updated | 2026-09-10 |