OrthoMCL
Also known as Ortholog Groups of Protein Sequences
OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences. It provides not only groups shared by two or more species/genomes, but also groups representing species-specific gene expansion families. So it serves as an important utility for automated eukaryotic genome annotation. OrthoMCL starts with reciprocal best hits within each genome as potential in-paralog/recent paralog pairs and reciprocal best hits across any two genomes as potential ortholog pairs. Related proteins are interlinked in a similarity graph. Then MCL (Markov Clustering algorithm,Van Dongen 2000; www.micans.org/mcl) is invoked to split mega-clusters. This process is analogous to the manual review in …
Getting access
Open access Open
- How to apply
- Not yet verified — we don’t publish a route we haven’t checked.
Summarised from a registry — the exact application route is not yet verified.
About this database
| Website | https://orthomcl.org/orthomcl/app |
|---|---|
| Subjects | Life Sciences · Biology · Basic Biological and Medical Research · General Genetics |
| Last updated | 2026-09-11 |